species:   Rhsol
pid:       PID0506
parent:    Rhi-milR-143
paralog:   
locus:     KB317843.1:7809-7903
matures:   ['UGGGAGUAGAAGAGAUUGAAAGU', 'GCCCAGUCCUUAACUUCUUUG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317843.1:7809-7903

4 out of bounds
58 alignments
31 proper strand
31 stranded perfect matches

       ***********************                              *************************          
AAGGUACGCGCCCAGUCCUUAACUUCUUUGUUGGUUCGACAUAUAACUAAAAGACCUUCGCCUGGGAGUAGAAGAGAUUGAAAGUGUUUCACCUG
.((((((((...((((((((.((((((.((..((((................))))..))...))))))..))).)))))...))))...)))).
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=9 c
---------GCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=21 a=0 c*
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=9 ma
---------GCCCAGUCCUUAACUUCUUUG----------------------------------------------------------------- l=21 a=0 ma*

-----------CCAGUCCUUAACUUCUUUGUUGG------------------------------------------------------------- l=23 a=3 
--------------------------------------ACAUAUAACUAAAAGACCUUCGC---------------------------------- l=23 a=1 
-------------------------------------------UAACUAAAAGACCUUCGCCUGGGAG--------------------------- l=25 a=1 
-----------------------------------------------UAAAAGACCUUCGCCUGGGAG--------------------------- l=21 a=1 
------------------------------------------------------------CCUGGGAGUAGAAGAGAUUGAAAG----------- l=24 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAG----------- l=22 a=1 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGU---------- l=23 a=9 (c,ma)
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUG--------- l=24 a=9 
--------------------------------------------------------------UGGGAGUAGAAGAGAUUGAAAGUGU-------- l=25 a=1 
---------------------------------------------------------------GGGAGUAGAAGAGAUUGAAAGUG--------- l=23 a=1 
------------------------------------------------------------------AGUAGAAGAGAUUGAAAGUGUU------- l=22 a=2 
------------------------------------------------------------------AGUAGAAGAGAUUGAAAGUGUUU------ l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-111110101000
fn-101
